PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 87aa    MW: 10048.2 Da    PI: 10.1944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-082571346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+   +++ +a + +  +   +W+ +ar+mg  +++ +++ ++  
         EMT01032 25 AWTQRQNKQFECALAVYDRDtphRWHDVARYMGGAKSADELRRHFER 71
                     8*****************99*************889********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-52275IPR001005SANT/Myb domain
PfamPF002491.5E-52471IPR001005SANT/Myb domain
SuperFamilySSF466892.43E-92580IPR009057Homeodomain-like
CDDcd001671.41E-52573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGYFQTKGVH QCRRRPAPKG SATTAWTQRQ NKQFECALAV YDRDTPHRWH DVARYMGGAK  60
SADELRRHFE RLVHDVAQIE SSGRYAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1526811165RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849211e-48KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441575.14e-31hypothetical protein SORBIDRAFT_09g029575, partial
SwissprotQ6NNN06e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLN1QTU76e-61N1QTU7_AEGTA; Uncharacterized protein
STRINGOB05G34580.16e-31(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-21RAD-like 6